With the application of massively parallel sequencing (MPS), more Y-SNP markers can be genotyped simultaneously in a single test. This greatly increased the resolution of Y-SNP haplogrouping and haplotyping.
In order to assess the feasibility of the haplogrouping and haplotyping from a great number of Y-SNP using whole genome sequencing (WGS) data, we have detected 92,698 Y-SNP markers selected from ISOGG and we have developed an app for our users to perform Y-SNP haplogrouping and haplotyping on them from whole genome sequencing data.
Y-SNP Haplogroup Hierarchy Finder supports batch search. Please go to Search Tool for detail instructions.
Y-SNP Haplogroup Hierarchy Finder: a web tool for Y-SNP haplogroup assignment
Bill Tseng1, Hsiao-Lin Hwa1, Chun-Yen Lin2, Yu-Jen Yu1, Adrian Linacre3, James Chun-I Lee1
PMID: 35347230 DOI: 10.1038/s10038-022-01033-0.